Browsing by Author "Botnar, Rene M."

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    Accelerating 3D MTC-BOOST in patients with congenital heart disease using a joint multi-scale variational neural network reconstruction
    (2022) Fotaki, Anastasia; Fuin, Niccolo; Nordio, Giovanna; Jimeno, Carlos Velasco; Qi, Haikun; Emmanuel, Yaso; Pushparajah, Kuberan; Botnar, Rene M.; Prieto, Claudia
    Purpose: Free-breathing Magnetization Transfer Contrast Bright blOOd phase SensiTive (MTC-BOOST) is a pro-totype balanced-Steady-State Free Precession sequence for 3D whole-heart imaging, that employs the endoge-nous magnetisation transfer contrast mechanism. This achieves reduction of flow and off-resonance artefacts, that often arise with the clinical T2prepared balanced-Steady-State Free Precession sequence, enabling high quality, contrast-agent free imaging of the thoracic cardiovascular anatomy. Fully-sampled MTC-BOOST acquisition requires long scan times (~10-24 min) and therefore acceleration is needed to permit its clinical incorporation. The aim of this study is to enable and clinically validate the 5-fold accelerated MTC-BOOST acquisition with joint Multi-Scale Variational Neural Network (jMS-VNN) reconstruction. Methods: Thirty-six patients underwent free-breathing, 3D whole-heart imaging with the MTC-BOOST sequence, which is combined with variable density spiral-like Cartesian sampling and 2D image navigators for translational motion estimation. This sequence acquires two differently weighted bright-blood volumes in an interleaved fashion, which are then joined in a phase sensitive inversion recovery reconstruction to obtain a complementary fully co-registered black-blood volume. Data from eighteen patients were used for training, whereas data from the remaining eighteen patients were used for testing/evaluation. The proposed deep-learning based approach adopts a supervised multi-scale variational neural network for joint reconstruction of the two differently weighted bright-blood volumes acquired with the 5-fold accelerated MTC-BOOST. The two contrast images are stacked as different channels in the network to exploit the shared information. The proposed approach is compared to the fully-sampled MTC-BOOST and 5-fold undersampled MTC-BOOST acquisition with Compressed Sensing (CS) reconstruction in terms of scan/reconstruction time and bright-blood image quality. Comparison against conventional 2-fold undersampled T2-prepared 3D bright-blood whole-heart clinical sequence (T2prep-3DWH) is also included. Results: Acquisition time was 3.0 & PLUSMN; 1.0 min for the 5-fold accelerated MTC-BOOST versus 9.0 +/- 1.1 min for the fully-sampled MTC-BOOST and 11.1 +/- 2.6 min for the T2prep-3DWH (p < 0.001 and p < 0.001, respectively). Reconstruction time was significantly lower with the jMS-VNN method compared to CS (10 +/- 0.5 min vs 20 +/- 2 s, p < 0.001). Image quality was higher for the proposed 5-fold undersampled jMS-VNN versus conventional CS, comparable or higher to the corresponding T2prep-3DWH dataset and similar to the fully-sampled MTC-BOOST. Conclusion: The proposed 5-fold accelerated jMS-VNN MTC-BOOST framework provides efficient 3D whole-heart bright-blood imaging in fast acquisition and reconstruction time with concomitant reduction of flow and off-resonance artefacts, that are frequently encountered with the clinical sequence. Image quality of the cardiac anatomy and thoracic vasculature is comparable or superior to the clinical scan and 5-fold CS reconstruction in faster reconstruction time, promising potential clinical adoption.
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    ADAMTS4-specific MR probe to assess aortic aneurysms in vivo using synthetic peptide libraries
    (2022) Kaufmann, Jan O.; Brangsch, Julia; Kader, Avan; Saatz, Jessica; Mangarova, Dilyana B.; Zacharias, Martin; Kempf, Wolfgang E.; Schwaar, Timm; Ponader, Marco; Adams, Lisa C.; Moeckel, Jana; Botnar, Rene M.; Taupitz, Matthias; Maegdefessel, Lars; Traub, Heike; Hamm, Bernd; Weller, Michael G.; Makowski, Marcus R.
    New biomarkers are required to improve the assessment of aortic wall integrity and risk of rupture. Here the authors report the development of an imaging probe for ADAMTS4, which they test in an abdominal aortic aneurysm mouse model and show in vivo prediction of aneurysm and rupture.
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    Arterial spin labeling angiography using a triple inversion recovery prepulse
    (WILEY-BLACKWELL, 2012) Andia, Marcelo E.; Botnar, Rene M.
    Arterial spin labeling is a well-known noninvasive angiography technique, which does not necessitate the use of a contrast agent. arterial spin labeling is still clinically underused because of several challenges: (1) long scan times because of the need for two acquisitions (labeled and nonlabeled datasets), (2) sensitivity to spatial misregistration because of the need for image subtraction, and (3) the need for precise planning and choice of an optimal inversion delay for best blood-to-background contrast. In this work, we propose a new arterial spin labeling method based on a triple-inversion-recovery sequence-arterial spin labeling. This approach exploits the ability of two nonselective inversion recovery prepulses to null the background signal over a wide range of T1 values, while maintaining the signal of labeled blood using a third slab selective inversion pulse. This technique therefore allows the acquisition of angiograms with a flexible inversion delay, easier planning procedure and no need for subtraction. Magn Reson Med, 2012. (C) 2011 Wiley Periodicals, Inc.
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    Clinical impact of novel cardiovascular magnetic resonance technology on patients with congenital heart disease: a scientific statement of the Association for European Pediatric and Congenital Cardiology and the European Association of Cardiovascular Imaging of the European Society of Cardiology
    (2024) Voges, Inga; Raimondi, Francesca; Mcmahon, Colin J.; Ait-Ali, Lamia; Babu-Narayan, Sonya, V; Botnar, Rene M.; Burkhardt, Barbara; Gabbert, Dominik D.; Grosse-Wortmann, Lars; Hasan, Hosan; Hansmann, Georg; Helbing, Willem A.; Krupickova, Sylvia; Latus, Heiner; Martini, Nicola; Martins, Duarte; Muthurangu, Vivek; Ojala, Tiina; van Ooij, Pim; Pushparajah, Kuberan; Rodriguez-Palomares, Jose; Sarikouch, Samir; Grotenhuis, Heynric B.; Greil, F. Gerald
    Cardiovascular magnetic resonance (CMR) imaging is recommended in patients with congenital heart disease (CHD) in clinical practice guidelines as the imaging standard for a large variety of diseases. As CMR is evolving, novel techniques are becoming available. Some of them are already used clinically, whereas others still need further evaluation. In this statement, the authors give an overview of relevant new CMR techniques for the assessment of CHD. Studies with reference values for these new techniques are listed in the .
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    Clinical quantitative coronary artery stenosis and coronary atherosclerosis imaging: a Consensus Statement from the Quantitative Cardiovascular Imaging Study Group
    (2023) Mezquita, Aldo J. Vazquez; Biavati, Federico; Falk, Volkmar; Alkadhi, Hatem; Hajhosseiny, Reza; Maurovich-Horvat, Pal; Manka, Robert; Kozerke, Sebastian; Stuber, Matthias; Derlin, Thorsten; Channon, Keith M.; Isgum, Ivana; Coenen, Adriaan; Foellmer, Bernhard; Dey, Damini; Volleberg, Rick H. J. A.; Meinel, Felix G.; Dweck, Marc R.; Piek, Jan J.; van de Hoef, Tim; Landmesser, Ulf; Guagliumi, Giulio; Giannopoulos, Andreas A.; Botnar, Rene M.; Khamis, Ramzi; Williams, Michelle C.; Newby, David E.; Dewey, Marc
    In this Consensus Statement, Dewey and the other members of the Quantitative Cardiovascular Imaging Study Group provide clinical consensus recommendations on the optimal use of different imaging techniques in various patient populations to detect and assess coronary artery stenosis and atherosclerosis.
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    Concurrent Molecular Magnetic Resonance Imaging of Inflammatory Activity and Extracellular Matrix Degradation for the Prediction of Aneurysm Rupture
    (2019) Brangsch, Julia; Reimann, Carolin; Kaufmann, Jan O.; Adams, Lisa C.; Onthank, David C.; Thone-Reineke, Christa; Robinson, Simon P.; Buchholz, Rebecca; Karst, Uwe; Botnar, Rene M.; Hamm, Bernd; Makowski, Marcus R.
    BACKGROUND: Molecular magnetic resonance imaging is a promising modality for the characterization of abdominal aortic aneurysms (AAAs). The combination of different molecular imaging biomarkers may improve the assessment of the risk of rupture. This study investigates the feasibility of imaging inflammatory activity and extracellular matrix degradation by concurrent dual-probe molecular magnetic resonance imaging in an AAA mouse model.
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    Congenital Heart Disease in Children: Coronary MR Angiography during Systole and Diastole with Dual Cardiac Phase Whole-Heart Imaging
    (RADIOLOGICAL SOC NORTH AMERICA, 2011) Uribe, Sergio; Hussain, Tarique; Valverde, Israel; Tejos, Cristian; Irarrazaval, Pablo; Fava, Mario; Beerbaum, Philipp; Botnar, Rene M.; Razavi, Reza; Schaeffter, Tobias; Greil, Gerald F.
    Purpose: To assess the optimal timing for coronary magnetic resonance (MR) angiography in children with congenital heart disease by using dual cardiac phase whole-heart MR imaging.
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    Coronary Magnetic Resonance Angiography in Chronic Coronary Syndromes
    (FRONTIERS MEDIA SA, 2021) Hajhosseiny, Reza; Munoz, Camila; Cruz, Gastao; Khamis, Ramzi; Kim, Won Yong; Prieto, Claudia; Botnar, Rene M.
    Cardiovascular disease is the leading cause of mortality worldwide, with atherosclerotic coronary artery disease (CAD) accounting for the majority of cases. X-ray coronary angiography and computed tomography coronary angiography (CCTA) are the imaging modalities of choice for the assessment of CAD. However, the use of ionising radiation and iodinated contrast agents remain drawbacks. There is therefore a clinical need for an alternative modality for the early identification and longitudinal monitoring of CAD without these associated drawbacks. Coronary magnetic resonance angiography (CMRA) could be a potential alternative for the detection and monitoring of coronary arterial stenosis, without exposing patients to ionising radiation or iodinated contrast agents. Further advantages include its versatility, excellent soft tissue characterisation and suitability for repeat imaging. Despite the early promise of CMRA, widespread clinical utilisation remains limited due to long and unpredictable scan times, onerous scan planning, lower spatial resolution, as well as motion related image quality degradation. The past decade has brought about a resurgence in CMRA technology, with significant leaps in image acceleration, respiratory and cardiac motion estimation and advanced motion corrected or motion-resolved image reconstruction. With the advent of artificial intelligence, great advances are also seen in deep learning-based motion estimation, undersampled and super-resolution reconstruction promising further improvements of CMRA. This has enabled high spatial resolution (1 mm isotropic), 3D whole heart CMRA in a clinically feasible and reliable acquisition time of under 10 min. Furthermore, latest super-resolution image reconstruction approaches which are currently under evaluation promise acquisitions as short as 1 min. In this review, we will explore the recent technological advances that are designed to bring CMRA closer to clinical reality.
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    Efficient non-contrast enhanced 3D Cartesian cardiovascular magnetic resonance angiography of the thoracic aorta in 3 min
    (2022) Fotaki, Anastasia; Munoz, Camila; Emanuel, Yaso; Hua, Alina; Bosio, Filippo; Kunze, Karl P.; Neji, Radhouene; Masci, Pier Giorgio; Botnar, Rene M.; Prieto, Claudia
    Background: The application of cardiovascular magnetic resonance angiography (CMRA) for the assessment of thoracic aortic disease is often associated with prolonged and unpredictable acquisition times and residual motion artefacts. To overcome these limitations, we have integrated undersampled acquisition with image-based navigators and inline non-rigid motion correction to enable a free-breathing, contrast-free Cartesian CMRA framework for the visualization of the thoracic aorta in a short and predictable scan of 3 min.
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    Evaluation of accelerated motion-compensated 3d water/fat late gadolinium enhanced MR for atrial wall imaging
    (SPRINGER, 2021) Munoz, Camila; Sim, Iain; Neji, Radhouene; Kunze, Karl P.; Masci, Pier Giorgio; Schmidt, Michaela; O'Neill, Mark; Williams, Steven; Botnar, Rene M.; Prieto, Claudia
    Objective 3D late gadolinium enhancement (LGE) imaging is a promising non-invasive technique for the assessment of atrial fibrosis. However, current techniques result in prolonged and unpredictable scan times and high rates of non-diagnostic images. The purpose of this study was to compare the performance of a recently proposed accelerated respiratory motion-compensated 3D water/fat LGE technique with conventional 3D LGE for atrial wall imaging. Materials and methods 18 patients (age: 55.7 +/- 17.1 years) with atrial fibrillation underwent conventional diaphragmatic navigator gated inversion recovery (IR)-prepared 3D LGE (dNAV) and proposed image-navigator motion-corrected water/fat IR-prepared 3D LGE (iNAV) imaging. Images were assessed for image quality and presence of fibrosis by three expert observers. The scan time for both techniques was recorded. Results Image quality scores were improved with the proposed compared to the conventional method (iNAV: 3.1 +/- 1.0 vs. dNAV: 2.6 +/- 1.0, p = 0.0012, with 1: Non-diagnostic to 4: Full diagnostic). Furthermore, scan time for the proposed method was significantly shorter with a 59% reduction is scan time (4.5 +/- 1.2 min vs. 10.9 +/- 3.9 min, p < 0.0001). The images acquired with the proposed method were deemed as inconclusive less frequently than the conventional images (expert 1/expert 2: 4/7 dNAV and 2/4 iNAV images inconclusive). Discussion The motion-compensated water/fat LGE method enables atrial wall imaging with diagnostic quality comparable to the current conventional approach with a significantly shorter scan of about 5 min.
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    Extended MRI-based PET motion correction for cardiac PET/MRI
    (2024) Aizaz, Mueez; Van der Pol, Jochem A. J.; Schneider, Alina; Munoz, Camila; Holtackers, Robert J.; Van Cauteren, Yvonne; Van Langen, Herman; Meeder, Joan G.; Rahel, Braim M.; Wierts, Roel; Botnar, Rene M.; Prieto, Claudia; Moonen, Rik P. M.; Kooi, M. E.
    Purpose: A 2D image navigator (iNAV) based 3D whole-heart sequence has been used to perform MRI and PET non-rigid respiratory motion correction for hybrid PET/MRI. However, only the PET data acquired during the acquisition of the 3D whole-heart MRI is corrected for respiratory motion. This study introduces and evaluates an MRI-based respiratory motion correction method of the complete PET data. Methods Twelve oncology patients scheduled for an additional cardiac 18F-Fluorodeoxyglucose (18F-FDG) PET/MRI and 15 patients with coronary artery disease (CAD) scheduled for cardiac 18F-Choline (18F-FCH) PET/MRI were included. A 2D iNAV recorded the respiratory motion of the myocardium during the 3D whole-heart coronary MR angiography (CMRA) acquisition (~ 10 min). A respiratory belt was used to record the respiratory motion throughout the entire PET/MRI examination (~ 30–90 min). The simultaneously acquired iNAV and respiratory belt signal were used to divide the acquired PET data into 4 bins. The binning was then extended for the complete respiratory belt signal. Data acquired at each bin was reconstructed and combined using iNAV-based motion fields to create a respiratory motion-corrected PET image. Motion-corrected (MC) and non-motion-corrected (NMC) datasets were compared. Gating was also performed to correct cardiac motion. The SUVmax and TBRmax values were calculated for the myocardial wall or a vulnerable coronary plaque for the 18F-FDG and 18F-FCH datasets, respectively. Results A pair-wise comparison showed that the SUVmax and TBRmax values of the motion corrected (MC) datasets were significantly higher than those for the non-motion-corrected (NMC) datasets (8.2 ± 1.0 vs 7.5 ± 1.0, p < 0.01 and 1.9 ± 0.2 vs 1.2 ± 0.2, p < 0.01, respectively). In addition, the SUVmax and TBRmax of the motion corrected and gated (MC_G) reconstructions were also higher than that of the non-motion-corrected but gated (NMC_G) datasets, although for the TBRmax this difference was not statistically significant (9.6 ± 1.3 vs 9.1 ± 1.2, p = 0.02 and 2.6 ± 0.3 vs 2.4 ± 0.3, p = 0.16, respectively). The respiratory motion-correction did not lead to a change in the signal to noise ratio. Conclusion The proposed respiratory motion correction method for hybrid PET/MRI improved the image quality of cardiovascular PET scans by increased SUVmax and TBRmax values while maintaining the signal-to-noise ratio. Trial registration METC162043 registered 01/03/2017.
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    Free-breathing, Contrast Agent-free Whole-Heart MTC-BOOST Imaging: Single-Center Validation Study in Adult Congenital Heart Disease
    (2023) Fotaki, Anastasia; Pushparajah, Kuberan; Hajhosseiny, Reza; Schneider, Alina; Alam, Harith; Ferreira, Joana; Neji, Radhouene; Kunze, Karl P.; Frigiola, Alessandra; Botnar, Rene M.; Prieto, Claudia
    Purpose: To assess the clinical performance of the three-dimensional, free-breathing, Magnetization Transfer Contrast Bright-and-black blOOd phase-SensiTive (MTC-BOOST) sequence in adult congenital heart disease (ACHD).Materials and Methods: In this prospective study, participants with ACHD undergoing cardiac MRI between July 2020 and March 2021 were scanned with the clinical T2-prepared balanced steady-state free precession sequence and proposed MTC-BOOST sequence. Four cardiologists scored their diagnostic confidence on a four-point Likert scale for sequential segmental analysis on images acquired with each sequence. Scan times and diagnostic confidence were compared using the Mann-Whitney test. Coaxial vascular dimensions at three anatomic landmarks were measured, and agreement between the research sequence and the corresponding clinical sequence was assessed with Bland-Altman analysis.Results: The study included 120 participants (mean age, 33 years +/- 13 [SD]; 65 men). The mean acquisition time of the MTC-BOOST sequence was significantly lower compared with that of the conventional clinical sequence (9 minutes +/- 2 vs 14 minutes +/- 5; P < .001). Diagnostic confidence was higher for the MTC-BOOST sequence compared with the clinical sequence (mean, 3.9 +/- 0.3 vs 3.4 +/- 0.7; P < .001). Narrow limits of agreement and mean bias less than 0.08 cm were found between the research and clinical vascu-lar measurements.Conclusion: The MTC-BOOST sequence provided efficient, high-quality, and contrast agent-free three-dimensional whole-heart imag-ing in ACHD, with shorter, more predictable acquisition time and improved diagnostic confidence compared with the reference stan-dard clinical sequence.
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    Free-running 3D whole-heart T1 and T2 mapping and cine MRI using low-rank reconstruction with non-rigid cardiac motion correction
    (2023) Phair, Andrew; Cruz, Gastao; Qi, Haikun; Botnar, Rene M.; Prieto, Claudia
    Purpose: To introduce non-rigid cardiac motion correction into a novel free-running framework for the simultaneous acquisition of 3D whole-heart myocardial T-1 and T-2 maps and cine images, enabling a similar to 3-min scan.
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    Highly efficient image navigator based 3D whole-heart cardiac MRA at 0.55T
    (2024) Castillo-Passi, Carlos; Kunze, Karl P.; Crabb, Michael G.; Munoz, Camila; Fotaki, Anastasia; Neji, Radhouene; Irarrazaval, Pablo; Prieto, Claudia; Botnar, Rene M.
    PurposeTo develop and evaluate a highly efficient free-breathing and contrast-agent-free three-dimensional (3D) whole-heart Cardiac Magnetic Resonance Angiography (CMRA) sequence at 0.55T.MethodsFree-breathing whole-heart CMRA has been previously proposed at 1.5 and 3T. Direct application of this sequence to 0.55T is not possible due to changes in the magnetic properties of the tissues. To enable free-breathing CMRA at 0.55T, pulse sequence design and acquisition parameters of a previously proposed whole-heart CMRA framework are optimized via Bloch simulations. Image navigators (iNAVs) are used to enable nonrigid respiratory motion-correction and 100% respiratory scan efficiency. Patch-based low-rank denoising is employed to accelerate the scan and account for the reduced signal-to-noise ratio at 0.55T. The proposed approach was evaluated on 11 healthy subjects. Image quality was assessed by a clinical expert (1: poor to 5: excellent) for all intrapericardiac structures. Quantitative evaluation was performed by assessing the vessel sharpness of the proximal right coronary artery (RCA).ResultsOptimization resulted in an imaging flip angle of 110 degrees$$ 11{0}<^>{\circ } $$, fat saturation flip angle of 180 degrees$$ 18{0}<^>{\circ } $$, and six k-space lines for iNAV encoding. The relevant cardiac structures and main coronary arteries were visible in all subjects, with excellent image quality (mean 4.9/5.0$$ 4.9/5.0 $$) and minimal artifacts (mean 4.9/5.0$$ 4.9/5.0 $$), with RCA vessel sharpness (50.3%+/- 9.8%$$ 50.3\%\pm 9.8\% $$) comparable to previous studies at 1.5T.ConclusionThe proposed approach enables 3D whole-heart CMRA at 0.55T in a 6-min scan (5.9 +/- 0.7 min$$ 5.9\pm 0.7\;\min $$), providing excellent image quality, minimal artifacts, and comparable vessel sharpness to previous 1.5T studies. Future work will include the evaluation of the proposed approach in patients with cardiovascular disease.
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    MR Fingerprinting for Liver Tissue Characterization: A Histopathologic Correlation Study
    (2023) Fujita, Shohei; Sano, Katsuhiro; Cruz, Gastao; Fukumura, Yuki; Kawasaki, Hideo; Fukunaga, Issei; Morita, Yuichi; Yoneyama, Masami; Kamagata, Koji; Abe, Osamu; Ikejima, Kenichi; Botnar, Rene M.; Prieto, Claudia; Aoki, Shigeki
    Background: Liver MR fingerprinting (MRF) enables simultaneous quantification of T1, T2, T2*, and proton density fat fraction (PDFF) maps in single breath-hold acquisitions. Histopathologic correlation studies are desired for its clinical use.Purpose: To compare liver MRF-derived metrics with separate reference quantitative MRI in participants with diffuse liver disease, evaluate scan-rescan repeatability of liver MRF, and validate MRF-derived measurements for histologic grading of liver biopsies. Materials and Methods: This prospective study included participants with diffuse liver disease undergoing MRI from July 2021 to January 2022. Participants underwent two-dimensional single-section liver MRF and separate reference quantitative MRI. Linear regression, Bland-Altman plots, and coefficients of variation were used to assess the bias and repeatability of liver MRF measurements. For participants undergoing liver biopsy, the association between mapping and histologic grading was evaluated by using the Spearman correlation coefficient.Results: Fifty-six participants (mean age, 59 years +/- 15 [SD]; 32 women) were included to compare mapping techniques and 23 participants were evaluated with liver biopsy (mean age, 52.7 years +/- 12.7; 14 women). The linearity of MRF with reference measurements in participants with diffuse liver disease (R2 value) for T1, T2, T2*, and PDFF maps was 0.86, 0.88, 0.54, and 0.99, respectively. The overall coefficients of variation for repeatability in the liver were 3.2%, 5.5%, 7.1%, and 4.6% for T1, T2, T2*, and PDFF maps, respectively. MRF-derived metrics showed high diagnostic performance in differentiating moderate or severe changes from mild or no changes (area under the receiver operating characteristic curve for fibrosis, inflammation, steatosis, and siderosis: 0.62 [95% CI: 0.52, 0.62], 0.92 [95% CI: 0.88, 0.92], 0.97 [95% CI: 0.96, 0.97], and 0.74 [95% CI: 0.57, 0.74], respectively).Conclusion: Liver MR fingerprinting provided repeatable T1, T2, T2*, and proton density fat fraction maps in high agreement with reference quantitative mapping and may correlate with pathologic grades in participants with diffuse liver disease.(c) RSNA, 2022
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    MRI-Guided Motion-Corrected PET Image Reconstruction for Cardiac PET/MRI
    (SOC NUCLEAR MEDICINE INC, 2021) Munoz, Camila; Ellis, Sam; Nekolla, Stephan G.; Kunze, Karl P.; Vitadello, Teresa; Neji, Radhouene; Botnar, Rene M.; Schnabel, Julia A.; Reader, Andrew J.; Prieto, Claudia
    Simultaneous PET/MRI has shown potential for the comprehensive assessment of myocardial health from a single examination. Furthermore, MRI-derived respiratory motion information, when incorporated into the PET image reconstruction, has been shown to improve PET image quality. Separately, MRI-based anatomically guided PET image reconstruction has been shown to effectively denoise images, but this denoising has so far been demonstrated mainly in brain imaging. To date, the combined benefits of motion compensation and anatomic guidance have not been demonstrated for myocardial PET/MRI. This work addressed this lack by proposing a single cardiac PET/MRI image reconstruction framework that fully utilizes MRI-derived information to allow both motion compensation and anatomic guidance within the reconstruction. Methods: Fifteen patients underwent an F-18-FDG cardiac PET/MRI scan with a previously introduced acquisition framework. The MRI data processing and image reconstruction pipeline produces respiratory motion fields and a high-resolution respiratory motion-corrected MR image with good tissue contrast. This MRI-derived information was then included in a respiratory motion-corrected, cardiac-gated, anatomically guided image reconstruction of the simultaneously acquired PET data. Reconstructions were evaluated by measuring myocardial contrast and noise and were compared with images from several comparative intermediate methods using the components of the proposed framework separately. Results: Including respiratory motion correction, cardiac gating, and anatomic guidance significantly increased contrast. In particular, myocardiumto-blood pool contrast increased by 143% on average (P < 0.0001), compared with conventional uncorrected, non-guided PET images. Furthermore, anatomic guidance significantly reduced image noise, by 16.1%, compared with nonguided image reconstruction (P < 0.0001). Conclusion: The proposed framework for MRI-derived motion compensation and anatomic guidance of cardiac PET data significantly improved image quality compared with alternative reconstruction methods. Each component of the reconstruction pipeline had a positive impact on the final image quality. These improvements have the potential to improve clinical interpretability and diagnosis based on cardiac PET/MR images.
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    Non-rigid motion-compensated 3D whole-heart T2 mapping in a hybrid 3T PET-MR system
    (2024) Schneider, Alina; Munoz, Camila; Hua, Alina; Ellis, Sam; Jeljeli, Sami; Kunze, Karl P.; Neji, Radhouene; Reader, Andrew J.; Reyes, Eliana; Ismail, Tevfik F.; Botnar, Rene M.; Prieto, Claudia
    Purpose: Simultaneous PET-MRI improves inflammatory cardiac disease diagnosis. However, challenges persist in respiratory motion and mis-registration between free-breathing 3D PET and 2D breath-held MR images. We propose a free-breathing non-rigid motion-compensated 3D T-2-mapping sequence enabling whole-heart myocardial tissue characterization in a hybrid 3T PET-MR system and provides non-rigid respiratory motion fields to correct also simultaneously acquired PET data.Methods: Free-breathing 3D whole-heart T-2-mapping was implemented on a hybrid 3T PET-MRI system. Three datasets were acquired with different T-2-preparation modules (0, 28, 55 ms) using 3-fold under sampled variable-density Cartesian trajectory. Respiratory motion was estimated via virtual 3D image navigators, enabling multi-contrast non-rigid motion-corrected MR reconstruction. T-2-maps were computed using dictionary-matching. Approach was tested in phantom, 8 healthy subjects, 14 MR only and 2 PET-MR patients with suspected cardiac disease and compared with spin echo reference (phantom) and clinical 2D T-2-mapping (in-vivo).Results: Phantom results show a high correlation (R-2 = 0.996) between proposed approach and gold standard 2D T-2 mapping. In-vivo 3D T-2-mapping average values in healthy subjects (39.0 +/- 1.4 ms) and patients (healthy tissue) (39.1 +/- 1.4 ms) agree with conventional 2D T-2-mapping (healthy = 38.6 +/- 1.2 ms, patients = 40.3 +/- 1.7 ms). Bland-Altman analysis reveals bias of 1.8 ms and 95% limits of agreement (LOA) of -2.4-6 ms for healthy subjects, and bias of 1.3 ms and 95% LOA of -1.9 to 4.6 ms for patients.Conclusion: Validated efficient 3D whole-heart T-2-mapping at hybrid 3T PET-MRI provides myocardial inflammation characterization and non-rigid respiratory motion fields for simultaneous PET data correction. Comparable T-2 values were achieved with both 3D and 2D methods. Improved image quality was observed in the PET images after MR-based motion correction.
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    Noninvasive Magnetic Resonance Imaging Evaluation of Endothelial Permeability in Murine Atherosclerosis Using an Albumin-Binding Contrast Agent
    (LIPPINCOTT WILLIAMS & WILKINS, 2012) Phinikaridou, Alkystis; Andia, Marcelo E.; Protti, Andrea; Indermuchle, Andreas; Shah, Ajay; Smith, Alberto; Warley, Alice; Botnar, Rene M.
    Backgound-Endothelial dysfunction promotes atherosclerosis and precedes acute cardiovascular events. We investigated wether in vivo magnetic resonance imaging with the use of an albumin-binding contrast agent, gadofosveset, could detect endothelial damage associated with atherosclerosis in apolipoprotein E-deficient (ApoE(-/-)) mice. Furthermore, we tested whether magnetic resonance imaging could noninvasively assess endothelial function by measuring the endothelial-dependent vasolidation in response to acetycholine.
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    Optimized Methods for the Surface Immobilization of Collagens and Collagen Binding Assays
    (2023) Chaher, Nadia; Digilio, Giuseppe; Lacerda, Sara; Botnar, Rene M.; Phinikaridou, Alkystis
    Fibrosis occurs in various tissues as a reparative response to injury or damage. If excessive, however, fibrosis can lead to tissue scarring and organ failure, which is associated with high morbidity and mortality. Collagen is a key driver of fibrosis, with type I and type III collagen being the primary types involved in many fibrotic diseases. Unlike conventional protocols used to immobilize other proteins (e.g., elastin, albumin, fibronectin, etc.), comprehensive protocols to reproducibly immobilize different types of collagens in order to produce stable coatings are not readily available. Immobilizing collagen is surprisingly challenging because multiple experimental conditions may affect the efficiency of immobilization, including the type of collagen, the pH, the temperature, and the type of microplate used. Here, a detailed protocol to reproducibly immobilize and quantify type I and III collagens resulting in stable and reproducible gels/films is provided. Furthermore, this work demonstrates how to perform, analyze, and interpret in vitro time-resolved fluorescence binding studies to investigate the interactions between collagens and candidate collagen-binding compounds (e.g., a peptide conjugated to a metal chelate carrying, for example, europium [Eu(III)]). Such an approach can be universally applied to various biomedical applications, including the field of molecular imaging to develop targeted imaging probes, drug development, cell toxicity studies, cell proliferation studies, and immunoassays.
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    Self-supervised learning-based diffeomorphic non-rigid motion estimation for fast motion-compensated coronary MR angiography
    (ELSEVIER SCIENCE INC, 2022) Munoz, Camila; Qi, Haikun; Cruz, Gastao; Kuestner, Thomas; Botnar, Rene M.; Prieto, Claudia
    Purpose: To accelerate non-rigid motion corrected coronary MR angiography (CMRA) reconstruction by developing a deep learning based non-rigid motion estimation network and combining this with an efficient implementation of the undersampled motion corrected reconstruction.