Browsing by Author "Opazo, L. Felipe"

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    Estimating taxonomic and functional structure along a tropical estuary: linking metabolic traits and aspects of ecosystem functioning
    (2024) Levipan, Hector A.; Opazo, L. Felipe; Arenas-Uribe, Sara; Wicki, Hernan; Marchant, Francisca; Florez-Leiva, Lennin; Avendano-Herrera, Ruben
    Microbial life forms are among the most ubiquitous on Earth, yet many remain understudied in Caribbean estuaries. We report on the prokaryote community composition of the Urab & aacute; Estuary in the Colombian Caribbean using 16S rRNA gene-transcript sequencing. We also assessed potential functional diversity through 38 metabolic traits inferred from 16S rRNA gene data. Water samples were collected from six sampling stations at two depths with contrasting light-penetration conditions along an approximately 100 km transect in the Gulf of Urab & aacute; in December 2019. Non-metric multidimensional scaling analysis grouped the samples into two distinct clusters along the transect and between depths. The primary variables influencing the prokaryote community composition were the sampling station, depth, salinity, and dissolved oxygen levels. Twenty percent of genera (i.e., 58 out 285) account for 95% of the differences between groups along the transect and among depths. All of the 38 metabolic traits studied showed some significant relationship with the tested environmental variables, especially salinity and except with temperature. Another non-metric multidimensional scaling analysis, based on community-weighted mean of traits, also grouped the samples in two clusters along the transect and over depth. Biodiversity facets, such as richness, evenness, and redundancy, indicated that environmental variations-stemming from river discharges-introduce an imbalance in functional diversity between surface prokaryote communities closer to the estuary's head and bottom communities closer to the ocean. Our research broadens the use of 16S rRNA gene transcripts beyond mere taxonomic assignments, furthering the field of trait-based prokaryote community ecology in transitional aquatic ecosystems.IMPORTANCEThe resilience of a dynamic ecosystem is directly tied to the ability of its microbes to navigate environmental gradients. This study delves into the changes in prokaryote community composition and functional diversity within the Urab & aacute; Estuary (Colombian Caribbean) for the first time. We integrate data from 16S rRNA gene transcripts (taxonomic and functional) with environmental variability to gain an understanding of this under-researched ecosystem using a multi-faceted macroecological framework. We found that significant shifts in prokaryote composition and in primary changes in functional diversity were influenced by physical-chemical fluctuations across the estuary's environmental gradient. Furthermore, we identified a potential disparity in functional diversity. Near-surface communities closer to the estuary's head exhibited differences compared to deeper communities situated farther away. Our research serves as a roadmap for posing new inquiries about the potential functional diversity of prokaryote communities in highly dynamic ecosystems, pushing forward the domain of multi-trait-based prokaryote community ecology.
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    Palaeoecological patterns of change in marine invertebrate faunas across the End-Triassic mass extinction event: Evidence from Larne, Northern Ireland
    (2021) Opazo, L. Felipe; Page, Kevin N.
    The End-Triassic mass extinction event [ETE] (201.5 Ma) marks a drastic turnover and loss of >50% of marine biodiversity. Suggested environmental factors include extreme climate change and global carbon-cycle perturbations linked to Central Atlantic Magmatic Province (CAMP) volcanism. Considerable attention has been paid to disentangling the causes and selectivity of the ETE, whilst downplaying the patterns of change in the structure and functioning of marine paleofauna. Here we provide detailed quantitative information from across the Triassic-Jurassic boundary at Waterloo Bay, Lame, Northern Ireland, to describe patterns of changes in different palaeoecological parameters across the ETE. The analysis was based on abundance data of species sampled from approximately 1 m intervals through the sequence. Dominance and richness were estimated using rarefaction techniques and beta-diversity index, and distinctness diversity indices were calculated. Changes in species composition were evaluated by multivariate analysis (nMDS, ANOMSIM and SIMPER). Rank abundance models were fitted, and functional diversity were estimated based on an ecospace model, applied to each sampled unit to detect changes in structure and ecological complexity. Across the ETE three distinctive states were identified: the pre-extinction state (Westbury Formation), characterised by an assemblage with high species richness and ecological redundancy, and with low taxonomic variation and functional diversity. The extinction state (Cotham and Langport members) represents a shift of the marine ecosystem, where >70% marine species disappears decreasing the ecosystems functioning the marine ecosystem around 80%. The recovery state (Lias Group), commencing some similar to 150 ky after the extinction, with ecologically complex assemblages as new taxa colonised, increasing variation in taxonomic distinctness and new contributing ecological traits and functional richness through the Hettangian. The palaeoecological patterns described here are robust enough to discount possible fades effects, but more important, is consistent with other studies reported globally, and demonstrates that the ecological signals detected in this study are real. (C) 2021 The Geologists' Association. Published by Elsevier Ltd. All rights reserved.