Browsing by Author "Prigent, Sylvain"

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    Convergent and divergent responses of the rhizosphere chemistry and bacterial communities to a stress gradient in the Atacama Desert
    (2023) Dussarrat, Thomas; Latorre H., Claudio; Barros Santos, Millena C.; Aguado Norese, Constanza; Prigent, Sylvain; Díaz, Francisca P.; Rolin, Dominique; González, Mauricio; Müller, Caroline; Gutiérrez Ilabaca, Rodrigo Antonio; Pétriacq, Pierre
    Plants can modulate their rhizosphere chemistry, thereby influencing microbe communities. Although our understanding of rhizosphere chemistry is growing, knowledge of its responses to abiotic constraints is limited, especially in realistic ecological contexts. Here, we combined predictive metabolomics with bacterial sequencing data to investigate whether rhizosphere chemistry responded to environmental constraints and shaped bacterial communities across an elevation gradient in the Atacama Desert. We found that metabolic adjustments of rhizosphere chemistry predicted the environment of four plant species independently of year, identifying important rhizosphere metabolic biomarkers. Inter-species predictions unveiled significant biochemical convergences. Subsequently, we linked metabolic predictors to variation in the abundance of operational taxonomic units (OTUs). Chemical response influenced distinct and common bacterial families between species and vegetation belts. The annotation of chemical markers and correlated bacterial families highlighted critical biological processes such as nitrogen starvation, metal pollution and plant development and defence. Overall, this study demonstrates a unique metabolic set likely involved in improving plant resilience to harsh edaphic conditions. Besides, the results emphasise the need to integrate ecology with plant metabolome and microbiome approaches to explore plant-soil interactions and better predict their responses to climate change and consequences for ecosystem dynamics.
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    Ecological and metabolic implications of the nurse effect of Maihueniopsis camachoi in the Atacama Desert
    (2024) Diaz, Francisca P.; Dussarrat, Thomas; Carrasco-Puga, Gabriela; Colombie, Sophie; Prigent, Sylvain; Decros, Guillaume; Bernillon, Stephane; Cassan, Cedric; Flandin, Amelie; Guerrero, Pablo C.; Gibon, Yves; Rolin, Dominique; Cavieres, Lohengrin A.; Petriacq, Pierre; Latorre, Claudio; Gutierrez, Rodrigo A.
    Plant-plant positive interactions are key drivers of community structure. Yet, the underlying molecular mechanisms of facilitation processes remain unexplored. We investigated the 'nursing' effect of Maihueniopsis camachoi, a cactus that thrives in the Atacama Desert between c. 2800 and 3800 m above sea level. We hypothesised that an important protective factor is thermal amelioration of less cold-tolerant species with a corresponding impact on molecular phenotypes.To test this hypothesis, we compared plant cover and temperatures within the cactus foliage with open areas and modelled the effect of temperatures on plant distribution. We combined eco-metabolomics and machine learning to test the molecular consequences of this association.Multiple species benefited from the interaction with M. camachoi. A conspicuous example was the extended distribution of Atriplex imbricata to colder elevations in association with M. camachoi (400 m higher as compared to plants in open areas). Metabolomics identified 93 biochemical markers predicting the interaction status of A. imbricata with 79% accuracy, independently of year.These findings place M. camachoi as a key species in Atacama plant communities, driving local biodiversity with an impact on molecular phenotypes of nursed species. Our results support the stress-gradient hypothesis and provide pioneer insights into the metabolic consequences of facilitation.
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    Phylogenetically diverse wild plant species use common biochemical strategies to thrive in the Atacama Desert
    (2024) Dussarrat, Thomas; Nilo-Poyanco, Ricardo; Moyano Yugovic, Tomas Custodio; Prigent, Sylvain; Jeffers, Tim L.; Diaz, Francisca P.; Decros, Guillaume; Audi, Lauren; Sondervan, Veronica M.; Shen, Bingran; Araus, Viviana; Rolin, Dominique; Shasha, Dennis; Coruzzi, Gloria M.; Gibon, Yves; Latorre H., Claudio; Petriacq, Pierre; Gutierrez Alliende, Rodrigo Hernán
    The best ideotypes are under mounting pressure due to increased aridity. Understanding the conserved molecular mechanisms that evolve in wild plants adapted to harsh environments is crucial in developing new strategies for agriculture. Yet our knowledge of such mechanisms in wild species is scant. We performed metabolic pathway reconstruction using transcriptome information from 32 Atacama and phylogenetically related species that do not live in Atacama (Sisters species). We analyzed reaction enrichment to understand the commonalities and differences of Atacama plants. To gain insights into the mechanisms that ensure survival, we compared expressed gene isoform numbers and gene expression patterns between the annotated biochemical reactions from 32 Atacama and Sister species. We found biochemical convergences characterized by reactions enriched in at least 50% of the Atacama species, pointing to potential advantages against drought and nitrogen starvation, for instance. These findings suggest that the adaptation in the Atacama Desert may result in part from shared genetic legacies governing the expression of key metabolic pathways to face harsh conditions. Enriched reactions corresponded to ubiquitous compounds common to extreme and agronomic species and were congruent with our previous metabolomic analyses. Convergent adaptive traits offer promising candidates for improving abiotic stress resilience in crop species.
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    Predictive metabolomics of multiple Atacama plant species unveils a core set of generic metabolites for extreme climate resilience
    (2022) Dussarrat, Thomas; Prigent, Sylvain; Latorre, Claudio; Bernillon, Stephane; Flandin, Amelie; Diaz, Francisca P.; Cassan, Cedric; Van Delft, Pierre; Jacob, Daniel; Varala, Kranthi; Joubes, Jerome; Gibon, Yves; Rolin, Dominique; Gutierrez, Rodrigo A.; Petriacq, Pierre
    Current crop yield of the best ideotypes is stagnating and threatened by climate change. In this scenario, understanding wild plant adaptations in extreme ecosystems offers an opportunity to learn about new mechanisms for resilience. Previous studies have shown species specificity for metabolites involved in plant adaptation to harsh environments. Here, we combined multispecies ecological metabolomics and machine learning-based generalized linear model predictions to link the metabolome to the plant environment in a set of 24 species belonging to 14 families growing along an altitudinal gradient in the Atacama Desert. Thirty-nine common compounds predicted the plant environment with 79% accuracy, thus establishing the plant metabolome as an excellent integrative predictor of environmental fluctuations. These metabolites were independent of the species and validated both statistically and biologically using an independent dataset from a different sampling year. Thereafter, using multiblock predictive regressions, metabolites were linked to climatic and edaphic stressors such as freezing temperature, water deficit and high solar irradiance. These findings indicate that plants from different evolutionary trajectories use a generic metabolic toolkit to face extreme environments. These core metabolites, also present in agronomic species, provide a unique metabolic goldmine for improving crop performances under abiotic pressure.