FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles

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dc.contributor.authorPolme, Sergei
dc.contributor.authorAbarenkov, Kessy
dc.contributor.authorHenrik Nilsson, R.
dc.contributor.authorLindahl, Bjorn D.
dc.contributor.authorClemmensen, Karina Engelbrecht
dc.contributor.authorKauserud, Havard
dc.contributor.authorNguyen, Nhu
dc.contributor.authorKjoller, Rasmus
dc.contributor.authorBates, Scott T.
dc.contributor.authorBaldrian, Petr
dc.contributor.authorFroslev, Tobias Guldberg
dc.contributor.authorAdojaan, Kristjan
dc.contributor.authorVizzini, Alfredo
dc.contributor.authorSuija, Ave
dc.contributor.authorPfister, Donald
dc.contributor.authorBaral, Hans-Otto
dc.contributor.authorJarv, Helle
dc.contributor.authorMadrid, Hugo
dc.contributor.authorNorden, Jenni
dc.contributor.authorLiu, Jian-Kui
dc.contributor.authorPawlowska, Julia
dc.contributor.authorPoldmaa, Kadri
dc.contributor.authorPartel, Kadri
dc.contributor.authorRunnel, Kadri
dc.contributor.authorHansen, Karen
dc.contributor.authorLarsson, Karl-Henrik
dc.contributor.authorHyde, Kevin David
dc.contributor.authorSandoval-Denis, Marcelo
dc.contributor.authorSmith, Matthew E.
dc.contributor.authorToome-Heller, Merje
dc.contributor.authorWijayawardene, Nalin N.
dc.contributor.authorMenolli, Nelson, Jr.
dc.contributor.authorReynolds, Nicole K.
dc.contributor.authorDrenkhan, Rein
dc.contributor.authorMaharachchikumbura, Sajeewa S. N.
dc.contributor.authorGibertoni, Tatiana B.
dc.contributor.authorLaessoe, Thomas
dc.contributor.authorDavis, William
dc.contributor.authorTokarev, Yuri
dc.contributor.authorCorrales, Adriana
dc.contributor.authorSoares, Adriene Mayra
dc.contributor.authorAgan, Ahto
dc.contributor.authorMachado, Alexandre Reis
dc.contributor.authorArguelles-Moyao, Andres
dc.contributor.authorDetheridge, Andrew
dc.contributor.authorde Meiras-Ottoni, Angelina
dc.contributor.authorVerbeken, Annemieke
dc.contributor.authorDutta, Arun Kumar
dc.contributor.authorCui, Bao-Kai
dc.contributor.authorPradeep, C. K.
dc.contributor.authorMarin, Cesar
dc.contributor.authorStanton, Daniel
dc.contributor.authorGohar, Daniyal
dc.contributor.authorWanasinghe, Dhanushka N.
dc.contributor.authorOtsing, Eveli
dc.contributor.authorAslani, Farzad
dc.contributor.authorGriffith, Gareth W.
dc.contributor.authorLumbsch, Thorsten H.
dc.contributor.authorGrossart, Hans-Peter
dc.contributor.authorMasigol, Hossein
dc.contributor.authorTimling, Ina
dc.contributor.authorHiiesalu, Inga
dc.contributor.authorOja, Jane
dc.contributor.authorKupagme, John Y.
dc.contributor.authorGeml, Jozsef
dc.contributor.authorAlvarez-Manjarrez, Julieta
dc.contributor.authorIlves, Kai
dc.contributor.authorLoit, Kaire
dc.contributor.authorAdamson, Kalev
dc.contributor.authorNara, Kazuhide
dc.contributor.authorKungas, Kati
dc.contributor.authorRojas-Jimenez, Keilor
dc.contributor.authorBitenieks, Kriss
dc.contributor.authorIrinyi, Laszlo
dc.contributor.authorNagy, Laszlo Laszlo
dc.contributor.authorSoonvald, Liina
dc.contributor.authorZhou, Li-Wei
dc.contributor.authorWagner, Lysett
dc.contributor.authorAime, M. Catherine
dc.contributor.authoropik, Maarja
dc.contributor.authorMujica, Maria Isabel
dc.contributor.authorMetsoja, Martin
dc.contributor.authorRyberg, Martin
dc.contributor.authorVasar, Martti
dc.contributor.authorMurata, Masao
dc.contributor.authorNelsen, Matthew P.
dc.contributor.authorCleary, Michelle
dc.contributor.authorSamarakoon, Milan C.
dc.contributor.authorDoilom, Mingkwan
dc.contributor.authorBahram, Mohammad
dc.contributor.authorHagh-Doust, Niloufar
dc.contributor.authorDulya, Olesya
dc.contributor.authorJohnston, Peter
dc.contributor.authorKohout, Petr
dc.contributor.authorChen, Qian
dc.contributor.authorTian, Qing
dc.contributor.authorNandi, Rajasree
dc.contributor.authorAmiri, Rasekh
dc.contributor.authorPerera, Rekhani Hansika
dc.contributor.authordos Santos Chikowski, Renata
dc.contributor.authorMendes-Alvarenga, Renato L.
dc.contributor.authorGaribay-Orijel, Roberto
dc.contributor.authorGielen, Robin
dc.contributor.authorPhookamsak, Rungtiwa
dc.contributor.authorJayawardena, Ruvishika S.
dc.contributor.authorRahimlou, Saleh
dc.contributor.authorKarunarathna, Samantha C.
dc.contributor.authorTibpromma, Saowaluck
dc.contributor.authorBrown, Shawn P.
dc.contributor.authorSepp, Siim-Kaarel
dc.contributor.authorMundra, Sunil
dc.contributor.authorLuo, Zhu-Hua
dc.contributor.authorBose, Tanay
dc.contributor.authorVahter, Tanel
dc.contributor.authorNetherway, Tarquin
dc.contributor.authorYang, Teng
dc.contributor.authorMay, Tom
dc.contributor.authorVarga, Torda
dc.contributor.authorLi, Wei
dc.contributor.authorCoimbra, Victor Rafael Matos
dc.contributor.authorde Oliveira, Virton Rodrigo Targino
dc.contributor.authorde Lima, Vitor Xavier
dc.contributor.authorMikryukov, Vladimir S.
dc.contributor.authorLu, Yongzhong
dc.contributor.authorMatsuda, Yosuke
dc.contributor.authorMiyamoto, Yumiko
dc.contributor.authorKoljalg, Urmas
dc.contributor.authorTedersoo, Leho
dc.date.accessioned2025-01-20T23:55:26Z
dc.date.available2025-01-20T23:55:26Z
dc.date.issued2020
dc.description.abstractThe cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies. Over the past decades, rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats. Yet, in spite of the progress of molecular methods, knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging. In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels. Combining the information from previous efforts such as FUNGuild and Fun(Fun) together with involvement of expert knowledge, we reannotated 10,210 and 151 fungal and Stramenopila genera, respectively. This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera, designed for rapid functional assignments of environmental studies. In order to assign the trait states to fungal species hypotheses, the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences. On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1% dissimilarity threshold.
dc.description.funderGrants-in-Aid for Scientific Research
dc.fuente.origenWOS
dc.identifier.doi10.1007/s13225-020-00466-2
dc.identifier.eissn1878-9129
dc.identifier.issn1560-2745
dc.identifier.urihttps://doi.org/10.1007/s13225-020-00466-2
dc.identifier.urihttps://repositorio.uc.cl/handle/11534/95087
dc.identifier.wosidWOS:000608948200001
dc.issue.numero1
dc.language.isoen
dc.pagina.final16
dc.pagina.inicio1
dc.revistaFungal diversity
dc.rightsacceso restringido
dc.subjectFungal traits
dc.subjectTrophic modes
dc.subjectFunction
dc.subjectGuild
dc.subjectBioinformatics
dc.subjectHigh-throughput sequencing
dc.subjectCommunity ecology
dc.subject.ods02 Zero Hunger
dc.subject.ods15 Life on Land
dc.subject.odspa02 Hambre cero
dc.subject.odspa15 Vida de ecosistemas terrestres
dc.titleFungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles
dc.typeartículo
dc.volumen105
sipa.indexWOS
sipa.trazabilidadWOS;2025-01-12
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